BCCM/ULC Cyanobacteria culture collection at the University of Liège (ISO9001 certified)

Последняя версия опубликована SCAR - Microbial Antarctic Resource System Jul 11, 2020 SCAR - Microbial Antarctic Resource System

BCCM/ULC is a small and dedicated public culture collection, currently containing one of the largest collections of documented (sub)polar cyanobacteria worldwide.

The BCCM/ULC collection is hosted by the Centre for Protein Engineering (the Unit) of the University of Liège. The host Unit is very active in research projects concerning the cyanobacterial diversity and biogeography, with a focus on polar biotopes. The approach used is polyphasic, including the isolation of strains and culture-independent methods (DGGE, clone libraries, pyrosequencing based on the ribosomal operon sequences). The participation to field expeditions in the Antarctic and Arctic has enabled to collect samples in many locations. Moreover, taxonomic research is carried out by the host Unit to improve the classification of the cyanobacterial phylum. It is based on a polyphasic approach combining the morphological and molecular characterizations of the strains.

Записи данных

Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 215 записей.

Данный экземпляр IPT архивирует данные и таким образом служит хранилищем (репозиторием) данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. Перечень версий служит для отображения истории публикации версий данного ресурса.

Загрузки

Скачайте последнюю версию данных этого ресурса в формате Darwin Core Archive (DwC-A) или метаданных ресурса в форматах EML или RTF:

Данные в формате DwC-A Скачать 215 Записи в English (40 KB) - Частота обновления: unknown
Метаданные в формате EML Скачать в English (17 KB)
Метаданные в формате RTF Скачать в English (16 KB)

Версии

В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.

Как оформить ссылку

Исследователи должны дать ссылку на эту работу следующим образом:

Wilmotte A, Beets K (2020): BCCM/ULC Cyanobacteria culture collection at the University of Liège (ISO9001 certified). v1.18. SCAR - Microbial Antarctic Resource System. Dataset/Occurrence. https://ipt.biodiversity.aq/resource?r=bccm_ulc_culture_collection_uliege&v=1.18

Права

Исследователи должны соблюдать следующие права:

Публикующей организацией и владельцем прав на данную работу является SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

Регистрация в GBIF

Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 08668664-5f23-4cdf-91f4-6835ab30118f.  SCAR - Microbial Antarctic Resource System отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке Scientific Committee on Antarctic Research.

Ключевые слова

Occurrence

Контакты

Кто является создателем ресурса:

Annick Wilmotte
BCCM/ULC culture collection at the University of Liège allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc
Kim Beets
Technical assistant
BCCM/ULC culture collection at the University of Liège Institute of Chemistry B6 Sart Tilman 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc

Кто может ответить на вопросы о ресурсе:

Annick Wilmotte
Promotor
BCCM/ULC culture collection at University of Liège Allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc

Кем заполнены метаданные:

Maxime Sweetlove
Research assistent
Royal Belgian Institute for Natural Sciences Rue Vautier 29 1000 Brussels Brussels BE
Annick Wilmotte
Promotor
BCCM/ULC culture collection at the University of Liège Allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87

Кто еще связан с данным ресурсом:

Paulette Charlier
Director
InBios-Centre for Protein Engineering Allée du 6 aout, 11 4000 Liège Wallonia BE

Географический охват

Global coverage, mainly Antarctica, Europe and the Americas

Ограничивающие координаты Юг Запад [-89.9, -180], Север Восток [90, -179.9]

Таксономический охват

The BCCM/ULC culture collection exclusively contains Cyanobacterial strains

Phylum  Cyanobacteria (Cyanobacteria)

Временной охват

Период формирования 1997-present

Данные проекта

In 1983 the Council of Ministers decided to bring the microbial resource holdings and the expertise available in different Belgian institutes together in a network of culture collections: with this the consortium of Belgian Coordinated Collections of Micro-organisms (BCCM) saw the light of day. Today, the BCCM consortium has grown to become one of the most important culture collections in the world, both in terms of the size and quality of the collections (bacteria, yeasts, moulds, plasmids, diatoms, DNA libraries) and its expertise. Not only does the consortium keep more than 200,000 quality controlled, characterised and documented units of biological material, but it also offers its expertise through services and partnership projects.

Название Belgian Co-ordinated Collection of Micro-organisms (BCCM)
Идентификатор BCCM
Финансирование The BCCM coordination cell is part of the Research Programmes Department of the Belgian Science Policy office (Belspo). The Research Programmes department funds the BCCM consortium to support research, development and innovation in life sciences and biotechnology. Belspo's integrated quality-environment management system is certified in accordance with the requirements of the ISO 9001 standard and registered in compliance with European regulation 1221/2009 (EMAS). The activities of the BCCM coordination cell are thus also guided by the principles of quality and environmental friendliness.
Описание района исследования global
Описание плана выполнения исследований The BCCM consortium is composed of 7 decentralised culture collections that are coordinated by a central team at the Belgian Science Policy Office. Each collection is part of a binomial with its host laboratory. The close cooperation between these two partners leads to an optimal balance between research and conservation activities. Moreover, the cooperation between the collections leads to the exchange and implementation of best practices for the conservation of microbial genetic resources and the harmonised application of international standards and regulations in microbiology. Thanks to the recurrent funding programme from the Belgian Science Policy Office, and with the support of their respective host institutes, about 70 people study and conserve the biodiversity present in the BCCM collections. As such, they contribute to research, development and innovation activities in biotechnology and life sciences.

Исполнители проекта:

Principal Investigator
Annick Wilmotte
Custodian Steward
Kim Beets

Методы сбора

The host laboratory has one of the largest research collections of documented (sub)polar cyanobacteria worldwide, with more than 100 strains characterized by phenotypic (morphology based on microscopic observations) and genotypic (16S rRNA and ITS sequences) analyses. The morphological identification shows that the strains belong to the orders Synechococcales, Oscillatoriales, Pleurocapsales, Chroococcidiopsidales and Nostocales. The strains are unicyanobacterial, but not axenic. They are available as living cultures, and the majority is also cryo-preserved (-70°C). BCCM/ULC is progressively incorporating the most interesting strains from the research collection of the host Unit into the public collection. In addition, ongoing research and public deposits from other (more temperate) geographical areas enrich progressively the variety of proposed strains. The public collection now includes the type strain of the recently described species Plectolyngbya hodgsonii (Taton et al., 2011, Polar Biology, 34: 181-191).

Охват исследования The BCCM/ULC cyanobacteria culture collection accepts the deposits (public and safe) of all kinds of cyanobacteria, if they correspond to its cultivation capacities and are not duplicates of already existing strains.
Контроль качества The services of deposits and public distribution are certified by an ISO9001 certificate, since 2012.

Описание этапа методики:

  1. Upon deposit, the depositors must fill the Accession form that includes the information on the origin and characteristics of the sampling site and of the srain isolated from the sampling site (http://bccm.belspo.be/docs/deposit-forms). These elements are used for the metadata.

Данные коллекции

Название коллекции BCCM/ULC Cyanobacteria Collection
Идентификатор коллекции BCCM/ULC
Идентификатор родительской коллекции BCCM
Методы сохранения образцов No treatment,  Deep frozen

Библиографические ссылки

  1. Taton, A., Grubisic, S., Ertz, D., Hodgson, D., Piccardi, R., Biondi, N., Tredici, M., Mainini, M., Losi, D., Marinelli, F., & Wilmotte, A. (2006). Polyphasic study of Antarctic cyanobacterial strains. Journal of Phycology, 42(6), 1257-1270. http://hdl.handle.net/2268/19904
  2. Biondi, N., Tredici, M., Taton, A., Wilmotte, A., Hodgson, D., Losi, D., & Marinelli, F. (2008). Cyanobacteria from benthic mats of Antarctic lakes as a source of new bioactivities. Journal of Applied Microbiology, 105(1), 105-115. http://hdl.handle.net/2268/17380
  3. A. Dumas, G. Laliberté, P. Lessard, J. de la Noüe, Biotreatment of fish farm effluents using the cyanobacterium Phormidium bohneri, Aquacultural Engineering, Volume 17, Issue 1, February 1998, Pages 57-68, ISSN 0144-8609, 10.1016/S0144-8609(97)01013-3.
  4. P. Chevalier, D. Proulx, P. Lessard, W.F. Vincent and J. de la Noüe. (2000) Nitrogen and phosphorus removal by high latitude mat-forming cyanobacteria for potential use in tertiary wastewater treatment Journal of Applied Phycology Volume 12, Number 2, 105-112, DOI: 10.1023/A:1008168128654 - Talbot P. & De la Noue. J (1993) Tertiary treatment of wastewater with Phormidium bohneri (Schmidle) under various light and temperature conditions. Water Research, vol. 27, pp. 153-159
  5. Nadeau T-L, Milbrandt EC & RC Castenholz (2001). Evolutionary relationships of cultivated Oscillatorians (Cyanobacteria). J. Phycol. 37: 650-654.
  6. Strunecki, O, Komarek, J, Johansen J, Lukesova A & Elster J. 2013. Molecular and morphological criteria for revision of the genus Microcoleus (Oscillatoriales, Cyanobacteria). J. Phycol. 49, 1167-1180.
  7. Jancusova, M., Kovacik, L., Pereira, A. B., Dusinsky, R., & Wilmotte, A. (2016). Polyphasic characterization of 10 selected ecologically relevant filamentous cyanobacterial strains from the South Shetland Islands, Maritime Antarctica. FEMS Microbiology Ecology, 92 (7), 100
  8. Sciuto K., Moschin E., Moro I. (2017) Cryptic cyanobacterial taxa from the Giant Cave (Triste Italy) Hydrobiologia; Katia Sciuto, Emanuela Moschin, and Isabella Moro (2017) Cryptic Cyanobacterial Diversity in the Giant Cave (Trieste, Italy): The New Genus Timaviella (Leptolyngbyaceae) Cryptogamie, Algologie 38 (4), 285-323
  9. Kopf M, Möke F, Bauwe H, Hess WR, Hagemann M. (2015). Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions. ISME Journal 9: 2139–2152.

Дополнительные метаданные

Цель The data set was created to document the origin of the strains in the BCCM/ULC collection
Описание частоты обновления ресурса The catalogue on the BCCM website is updated regularly, at least twice per year.
Альтернативные идентификаторы 08668664-5f23-4cdf-91f4-6835ab30118f
https://ipt.biodiversity.aq/resource?r=bccm_ulc_culture_collection_uliege