BCCM/ULC Cyanobacteria culture collection at the University of Liège (ISO9001 certified)

最新版本 由 SCAR - Microbial Antarctic Resource System 發佈於 Jan 13, 2020 SCAR - Microbial Antarctic Resource System

BCCM/ULC is a small and dedicated public culture collection, currently containing one of the largest collections of documented (sub)polar cyanobacteria worldwide.

The BCCM/ULC collection is hosted by the Centre for Protein Engineering (the Unit) of the University of Liège. The host Unit is very active in research projects concerning the cyanobacterial diversity and biogeography, with a focus on polar biotopes. The approach used is polyphasic, including the isolation of strains and culture-independent methods (DGGE, clone libraries, pyrosequencing based on the ribosomal operon sequences). The participation to field expeditions in the Antarctic and Arctic has enabled to collect samples in many locations. Moreover, taxonomic research is carried out by the host Unit to improve the classification of the cyanobacterial phylum. It is based on a polyphasic approach combining the morphological and molecular characterizations of the strains.

Data Records

The data in this 出現紀錄 resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 215 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

下載

下載最新版本的Darwin Core Archive (DwC-A)資源,或資源元數據的EML或RTF文字檔。

DwC-A資料集 下載 215 紀錄 在 English 中 (40 KB) - Update frequency: 有可能更新,但不確知何時
元數據EML檔 下載 在 English 中 (17 KB)
元數據RTF文字檔 下載 在 English 中 (16 KB)

版本

The table below shows only published versions of the resource that are publicly accessible.

如何引用

研究者應依照以下指示引用此資源。:

Wilmotte A, Beets K (2020): BCCM/ULC Cyanobacteria culture collection at the University of Liège (ISO9001 certified). v1.12. SCAR - Microbial Antarctic Resource System. Dataset/Occurrence. https://ipt.biodiversity.aq/resource?r=bccm_ulc_culture_collection_uliege&v=1.12

Rights

研究者應尊重以下權利聲明。:

The publisher and rights holder of this work is SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF 註冊

此資源已向GBIF註冊,並指定以下之GBIF UUID: 08668664-5f23-4cdf-91f4-6835ab30118f。  SCAR - Microbial Antarctic Resource System 發佈此資源,並經由Scientific Committee on Antarctic Research同意向GBIF註冊成為資料發佈者。

關鍵字

Occurrence

聯絡資訊

資源建立者:

Annick Wilmotte
BCCM/ULC culture collection at the University of Liège allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc
Kim Beets
Technical assistant
BCCM/ULC culture collection at the University of Liège Institute of Chemistry B6 Sart Tilman 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc

可回覆此資源相關問題者:

Annick Wilmotte
Promotor
BCCM/ULC culture collection at University of Liège Allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87
http://bccm.belspo.be/about-us/bccm-ulc

元數據填寫者:

Maxime Sweetlove
Research assistent
Royal Belgian Institute for Natural Sciences Rue Vautier 29 1000 Brussels Brussels BE
Annick Wilmotte
Promotor
BCCM/ULC culture collection at the University of Liège Allée du 6 aout, 11 4000 Liège Wallonia BE +32-(0)4-366 33 87

與此資源的相關者:

Paulette Charlier
Director
InBios-Centre for Protein Engineering Allée du 6 aout, 11 4000 Liège Wallonia BE

地理涵蓋範圍

Global coverage, mainly Antarctica, Europe and the Americas

界定座標範圍 緯度南界 經度西界 [-89.9, -180], 緯度北界 經度東界 [90, -179.9]

分類群涵蓋範圍

The BCCM/ULC culture collection exclusively contains Cyanobacterial strains

Phylum  Cyanobacteria (Cyanobacteria)

時間涵蓋範圍

彙整期間 1997-present

計畫資料

In 1983 the Council of Ministers decided to bring the microbial resource holdings and the expertise available in different Belgian institutes together in a network of culture collections: with this the consortium of Belgian Coordinated Collections of Micro-organisms (BCCM) saw the light of day. Today, the BCCM consortium has grown to become one of the most important culture collections in the world, both in terms of the size and quality of the collections (bacteria, yeasts, moulds, plasmids, diatoms, DNA libraries) and its expertise. Not only does the consortium keep more than 200,000 quality controlled, characterised and documented units of biological material, but it also offers its expertise through services and partnership projects.

計畫名稱 Belgian Co-ordinated Collection of Micro-organisms (BCCM)
辨識碼 BCCM
經費來源 The BCCM coordination cell is part of the Research Programmes Department of the Belgian Science Policy office (Belspo). The Research Programmes department funds the BCCM consortium to support research, development and innovation in life sciences and biotechnology. Belspo's integrated quality-environment management system is certified in accordance with the requirements of the ISO 9001 standard and registered in compliance with European regulation 1221/2009 (EMAS). The activities of the BCCM coordination cell are thus also guided by the principles of quality and environmental friendliness.
研究區域描述 global
研究設計描述 The BCCM consortium is composed of 7 decentralised culture collections that are coordinated by a central team at the Belgian Science Policy Office. Each collection is part of a binomial with its host laboratory. The close cooperation between these two partners leads to an optimal balance between research and conservation activities. Moreover, the cooperation between the collections leads to the exchange and implementation of best practices for the conservation of microbial genetic resources and the harmonised application of international standards and regulations in microbiology. Thanks to the recurrent funding programme from the Belgian Science Policy Office, and with the support of their respective host institutes, about 70 people study and conserve the biodiversity present in the BCCM collections. As such, they contribute to research, development and innovation activities in biotechnology and life sciences.

The personnel involved in the project:

研究主持人
Annick Wilmotte
託管人
Kim Beets

取樣方法

The host laboratory has one of the largest research collections of documented (sub)polar cyanobacteria worldwide, with more than 100 strains characterized by phenotypic (morphology based on microscopic observations) and genotypic (16S rRNA and ITS sequences) analyses. The morphological identification shows that the strains belong to the orders Synechococcales, Oscillatoriales, Pleurocapsales, Chroococcidiopsidales and Nostocales. The strains are unicyanobacterial, but not axenic. They are available as living cultures, and the majority is also cryo-preserved (-70°C). BCCM/ULC is progressively incorporating the most interesting strains from the research collection of the host Unit into the public collection. In addition, ongoing research and public deposits from other (more temperate) geographical areas enrich progressively the variety of proposed strains. The public collection now includes the type strain of the recently described species Plectolyngbya hodgsonii (Taton et al., 2011, Polar Biology, 34: 181-191).

研究範圍 The BCCM/ULC cyanobacteria culture collection accepts the deposits (public and safe) of all kinds of cyanobacteria, if they correspond to its cultivation capacities and are not duplicates of already existing strains.
品質控管 The services of deposits and public distribution are certified by an ISO9001 certificate, since 2012.

方法步驟描述:

  1. Upon deposit, the depositors must fill the Accession form that includes the information on the origin and characteristics of the sampling site and of the srain isolated from the sampling site (http://bccm.belspo.be/docs/deposit-forms). These elements are used for the metadata.

收藏資料

蒐藏名稱 BCCM/ULC Cyanobacteria Collection
蒐藏編號 BCCM/ULC
上層採集品識別碼 BCCM
Specimen preservation methods No treatment,  Deep frozen

引用文獻

  1. Taton, A., Grubisic, S., Ertz, D., Hodgson, D., Piccardi, R., Biondi, N., Tredici, M., Mainini, M., Losi, D., Marinelli, F., & Wilmotte, A. (2006). Polyphasic study of Antarctic cyanobacterial strains. Journal of Phycology, 42(6), 1257-1270. http://hdl.handle.net/2268/19904
  2. Biondi, N., Tredici, M., Taton, A., Wilmotte, A., Hodgson, D., Losi, D., & Marinelli, F. (2008). Cyanobacteria from benthic mats of Antarctic lakes as a source of new bioactivities. Journal of Applied Microbiology, 105(1), 105-115. http://hdl.handle.net/2268/17380
  3. A. Dumas, G. Laliberté, P. Lessard, J. de la Noüe, Biotreatment of fish farm effluents using the cyanobacterium Phormidium bohneri, Aquacultural Engineering, Volume 17, Issue 1, February 1998, Pages 57-68, ISSN 0144-8609, 10.1016/S0144-8609(97)01013-3.
  4. P. Chevalier, D. Proulx, P. Lessard, W.F. Vincent and J. de la Noüe. (2000) Nitrogen and phosphorus removal by high latitude mat-forming cyanobacteria for potential use in tertiary wastewater treatment Journal of Applied Phycology Volume 12, Number 2, 105-112, DOI: 10.1023/A:1008168128654 - Talbot P. & De la Noue. J (1993) Tertiary treatment of wastewater with Phormidium bohneri (Schmidle) under various light and temperature conditions. Water Research, vol. 27, pp. 153-159
  5. Nadeau T-L, Milbrandt EC & RC Castenholz (2001). Evolutionary relationships of cultivated Oscillatorians (Cyanobacteria). J. Phycol. 37: 650-654.
  6. Strunecki, O, Komarek, J, Johansen J, Lukesova A & Elster J. 2013. Molecular and morphological criteria for revision of the genus Microcoleus (Oscillatoriales, Cyanobacteria). J. Phycol. 49, 1167-1180.
  7. Jancusova, M., Kovacik, L., Pereira, A. B., Dusinsky, R., & Wilmotte, A. (2016). Polyphasic characterization of 10 selected ecologically relevant filamentous cyanobacterial strains from the South Shetland Islands, Maritime Antarctica. FEMS Microbiology Ecology, 92 (7), 100
  8. Sciuto K., Moschin E., Moro I. (2017) Cryptic cyanobacterial taxa from the Giant Cave (Triste Italy) Hydrobiologia; Katia Sciuto, Emanuela Moschin, and Isabella Moro (2017) Cryptic Cyanobacterial Diversity in the Giant Cave (Trieste, Italy): The New Genus Timaviella (Leptolyngbyaceae) Cryptogamie, Algologie 38 (4), 285-323
  9. Kopf M, Möke F, Bauwe H, Hess WR, Hagemann M. (2015). Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions. ISME Journal 9: 2139–2152.

額外的元數據

目的 The data set was created to document the origin of the strains in the BCCM/ULC collection
維護說明 The catalogue on the BCCM website is updated regularly, at least twice per year.
替代的識別碼 08668664-5f23-4cdf-91f4-6835ab30118f
https://ipt.biodiversity.aq/resource?r=bccm_ulc_culture_collection_uliege