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Microbial metabarcoding surveys (Bacteria, Archaea and Eukaryota) of the arctic marine environment

Latest version published by SCAR - Microbial Antarctic Resource System on Mar 28, 2019 SCAR - Microbial Antarctic Resource System

Large amplicon sequencing dataset (Illumina MiSeq) targeting Bacteria/Archaea (16S ssu rRNA gene) and Eukaryota (18S ssu rRNA gene) from samples taken in the Arctic marine environment, following the Earth Microbiome Project protocol.

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Rights

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The publisher and rights holder of this work is SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: a5aa5dde-aba1-475e-8781-d3a451b0eb15.  SCAR - Microbial Antarctic Resource System publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Scientific Committee on Antarctic Research.

Keywords

Metadata

Contacts

Who created the resource:

Eric Collins
Assistant professor
College of Fisheries and Ocean Sciences Fairbanks US

Who can answer questions about the resource:

Eric Collins
Assistant professor
College of Fisheries and Ocean Sciences Fairbanks US

Who filled in the metadata:

Maxime Sweetlove
Research assistant
Royal Belgian Institute of Natural Sciences Rue Vautier 29 1000 Brussels BE

Who else was associated with the resource:

User

Geographic Coverage

Complete coverage of the Arctic marine environments.

Bounding Coordinates South West [67.668, -176.761], North East [89.99, 157.828]

Taxonomic Coverage

Eukaryotes in marine environments, profiled by sequencing the v4 region of the 18S ssu rRNA gene, using the primer set published by Stoeck et al. (doi:10.1111/j.1365-294X.2009.04480.x) TAReuk454FWD1 CCAGCASCYGCGGTAATTCC TAReukREV3_modified ACTTTCGTTCTTGATYRATGA

Domain  Eukaryota (Eukaryotes)

Bacteria and Archaea in marine environments, profiled by sequencing the v4 region of the 16S ssu rRNA gene, using the primer set published by Apprill et al. (doi:10.3354/ame01753) 515F GTGCCAGCMGCCGCGGTAA 806RB GGACTACNVGGGTWTCTAAT

Domain  Bacteria (Bacteria),  Archaea (Archaea)

Temporal Coverage

Start Date / End Date 2007-11-20 / 2016-07-29