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Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments

Latest version published by SCAR - Microbial Antarctic Resource System on Jan 31, 2019 SCAR - Microbial Antarctic Resource System

Microbial dataset containing sequenced genes (ureC gene) from Thaumarchaeota from the Beaufort Sea (Arctic) and the Amundsen Sea (Antarctica), as well as a metagenome (454 pyrosequencing) the Beaufort Sea.

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How to cite

Researchers should cite this work as follows:

Alonso-Saez L, Waller A, Bakker K, Farnelid H, Yager P, Lovejoy C, Tremblay J, Potvin M, Heinrich F, Estrada M, Riemann L, Bork P, Pedros-Alio C, Bertilsson S (2019): Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments. v1.0. SCAR - Microbial Antarctic Resource System. Dataset/Metadata. http://ipt.biodiversity.aq/resource?r=arctic_antarctic_marine_archaea&v=1.0

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 53fb0f04-3ba5-4fe8-8ea4-0511914bd0c3.  SCAR - Microbial Antarctic Resource System publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Scientific Committee on Antarctic Research.

Keywords

Metadata

Contacts

Who created the resource:

Laura Alonso-Saez
Uppsala University Uppsala SE
Alion Waller
European Molecular Biology Laboratory Heidelberg DE
Kevin Bakker
University of Michigan Ann Arbor US
Hanna Farnelid
Linnaeus University Kalmar SE
Patricia Yager
University of Georgia Athens US
Connie Lovejoy
Université Laval Québec CA
Jean-Eric Tremblay
Université Laval Québec CA
Marianne Potvin
Université Laval Québec CA
Frederike Heinrich
Uppsala University Uppsala SE
Marta Estrada
Institut de Ciències del Mar Barcelona ES
Lasse Riemann
University of Copenhagen Helsingør DK
Peer Bork
European Molecular Biology Laboratory Heidelberg DE
Carlos Pedros-Alio
Institut de Ciències del Mar Barcelona ES
Stefan Bertilsson
Uppsala University Uppsala SE

Who can answer questions about the resource:

Laura Alonso-Saez
Uppsala University Uppsala SE

Who filled in the metadata:

Maxime Sweetlove
Research assistent
Royal Belgian Institute for Natural Sciences 1000 Brussels BE

Who else was associated with the resource:

User

Geographic Coverage

Amundsen Sea (Antarctica, Southern Ocean); Beaufort Sea (Arctic)

Bounding Coordinates South West [-77.02, -123.897], North East [71.033, 170.5]

Taxonomic Coverage

Archaea

Domain  Archaea (Archaea)

Project Data

No Description available

Title Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments
Funding 454 pyrosequencing was supported by the K&A Wallemberg foundation. This work is a contribution to the International Polar Year–CFL system study (2007/2008) supported through grants from the Canadian International Polar Year Federal Program Office and the Natural Sciences and Engineering Research Council (NSERC) Canada, the Spanish Ministry of Science and Innovation Grant Boreal CLG2007-28872-E/ANT, and the Swedish Research Council. Additional support was given by the Marie Curiellowship PIEFGA-2008-221121 and a “Juan de la Cierva” contract from the Spanish Ministry of Science and Innovation. We acknowledge support by the National Science Foundation Antarctic Organisms and Ecosystems ProgramGrants ANT-0741409 and ANT-08361440; Swedish Research Council Environment, Agricultural Sciences, and Spatial Planning Grant 217- 2006-342; and NSERC of Canada.

The personnel involved in the project:

Laura Alonso-Saez

Sampling Methods

Samples were collected by using a ship-deployed rosette for open water sampling and through the ship’s internal moon pool for winter ice-covered sampling.

Study Extent Water samples were collected near the surface and in deeper halocline waters from the Arctic Southeast Beaufort Sea during the overwintering CFL cruise and in the upper 500 m from the Antarctic Amundsen and Ross seas during the summer in the Oden Southern Ocean cruise.

Method step description:

  1. details are given in: https://www.pnas.org/content/pnas/suppl/2012/09/27/1201914109.DCSupplemental/sapp.pdf

Bibliographic Citations

  1. Alonso-Sáez, L., Waller, A. S., Mende, D. R., Bakker, K., Farnelid, H., Yager, P. L., ... & Estrada, M. (2012). Role for urea in nitrification by polar marine Archaea. Proceedings of the National Academy of Sciences, 109(44), 17989-17994.

Additional Metadata

Alternative Identifiers http://ipt.biodiversity.aq/resource?r=arctic_antarctic_marine_archaea