Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments

Latest version published by SCAR - Microbial Antarctic Resource System on Mar 19, 2019 SCAR - Microbial Antarctic Resource System
Publication date:
19 March 2019
License:
CC-BY 4.0

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Description

Microbial dataset containing sequenced genes (ureC gene) from Thaumarchaeota from the Beaufort Sea (Arctic) and the Amundsen Sea (Antarctica), as well as a metagenome (454 pyrosequencing) the Beaufort Sea.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Alonso-Saez L, Waller A, Bakker K, Farnelid H, Yager P, Lovejoy C, Tremblay J, Potvin M, Heinrich F, Estrada M, Riemann L, Bork P, Pedros-Alio C, Bertilsson S (2019): Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments. v1.1. SCAR - Microbial Antarctic Resource System. Dataset/Metadata. https://ipt.biodiversity.aq/resource?r=arctic_antarctic_marine_archaea&v=1.1

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 53fb0f04-3ba5-4fe8-8ea4-0511914bd0c3.  SCAR - Microbial Antarctic Resource System publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Scientific Committee on Antarctic Research.

Keywords

Metadata

Contacts

Laura Alonso-Saez
  • Originator
  • Point Of Contact
Uppsala University
Uppsala
SE
Alion Waller
  • Originator
European Molecular Biology Laboratory
Heidelberg
DE
Kevin Bakker
  • Originator
University of Michigan
Ann Arbor
US
Hanna Farnelid
  • Originator
Linnaeus University
Kalmar
SE
Patricia Yager
  • Originator
University of Georgia
Athens
US
Connie Lovejoy
  • Originator
Université Laval
Québec
CA
Jean-Eric Tremblay
  • Originator
Université Laval
Québec
CA
Marianne Potvin
  • Originator
Université Laval
Québec
CA
Frederike Heinrich
  • Originator
Uppsala University
Uppsala
SE
Marta Estrada
  • Originator
Institut de Ciències del Mar
Barcelona
ES
Lasse Riemann
  • Originator
University of Copenhagen
Helsingør
DK
Peer Bork
  • Originator
European Molecular Biology Laboratory
Heidelberg
DE
Carlos Pedros-Alio
  • Originator
Institut de Ciències del Mar
Barcelona
ES
Stefan Bertilsson
  • Originator
Uppsala University
Uppsala
SE
Maxime Sweetlove
  • Metadata Provider
Research assistent
Royal Belgian Institute for Natural Sciences
1000 Brussels
BE

Geographic Coverage

Amundsen Sea (Antarctica, Southern Ocean); Beaufort Sea (Arctic)

Bounding Coordinates South West [-77.02, -123.897], North East [71.033, 170.5]

Taxonomic Coverage

Archaea

Domain Archaea (Archaea)

Project Data

No Description available

Title Sequenced genes (ureC gene) and a metagenome from Archaea in Arctic and Antarctic marine environments
Funding 454 pyrosequencing was supported by the K&A Wallemberg foundation. This work is a contribution to the International Polar Year–CFL system study (2007/2008) supported through grants from the Canadian International Polar Year Federal Program Office and the Natural Sciences and Engineering Research Council (NSERC) Canada, the Spanish Ministry of Science and Innovation Grant Boreal CLG2007-28872-E/ANT, and the Swedish Research Council. Additional support was given by the Marie Curiellowship PIEFGA-2008-221121 and a “Juan de la Cierva” contract from the Spanish Ministry of Science and Innovation. We acknowledge support by the National Science Foundation Antarctic Organisms and Ecosystems ProgramGrants ANT-0741409 and ANT-08361440; Swedish Research Council Environment, Agricultural Sciences, and Spatial Planning Grant 217- 2006-342; and NSERC of Canada.

The personnel involved in the project:

Laura Alonso-Saez

Sampling Methods

Samples were collected by using a ship-deployed rosette for open water sampling and through the ship’s internal moon pool for winter ice-covered sampling.

Study Extent Water samples were collected near the surface and in deeper halocline waters from the Arctic Southeast Beaufort Sea during the overwintering CFL cruise and in the upper 500 m from the Antarctic Amundsen and Ross seas during the summer in the Oden Southern Ocean cruise.

Method step description:

  1. details are given in: https://www.pnas.org/content/pnas/suppl/2012/09/27/1201914109.DCSupplemental/sapp.pdf

Bibliographic Citations

  1. Alonso-Sáez, L., Waller, A. S., Mende, D. R., Bakker, K., Farnelid, H., Yager, P. L., ... & Estrada, M. (2012). Role for urea in nitrification by polar marine Archaea. Proceedings of the National Academy of Sciences, 109(44), 17989-17994.

Additional Metadata

Alternative Identifiers 53fb0f04-3ba5-4fe8-8ea4-0511914bd0c3
https://ipt.biodiversity.aq/resource?r=arctic_antarctic_marine_archaea