Microbial metabarcoding surveys (Bacteria, Archaea and Eukaryota) of the arctic marine environment

Metadata-only
Latest version published by SCAR - Microbial Antarctic Resource System on Mar 28, 2019 SCAR - Microbial Antarctic Resource System
Publication date:
28 March 2019
License:
CC-BY 4.0

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Description

Large amplicon sequencing dataset (Illumina MiSeq) targeting Bacteria/Archaea (16S ssu rRNA gene) and Eukaryota (18S ssu rRNA gene) from samples taken in the Arctic marine environment, following the Earth Microbiome Project protocol.

Versions

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Rights

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The publisher and rights holder of this work is SCAR - Microbial Antarctic Resource System. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: a5aa5dde-aba1-475e-8781-d3a451b0eb15.  SCAR - Microbial Antarctic Resource System publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Scientific Committee on Antarctic Research.

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Metadata

Contacts

Eric Collins
  • Originator ●
  • Point Of Contact
Assistant professor
College of Fisheries and Ocean Sciences
Fairbanks
US
Maxime Sweetlove
  • Metadata Provider
Research assistant
Royal Belgian Institute of Natural Sciences
Rue Vautier 29
1000 Brussels
BE

Geographic Coverage

Complete coverage of the Arctic marine environments.

Bounding Coordinates South West [67.668, -176.761], North East [89.99, 157.828]

Taxonomic Coverage

Eukaryotes in marine environments, profiled by sequencing the v4 region of the 18S ssu rRNA gene, using the primer set published by Stoeck et al. (doi:10.1111/j.1365-294X.2009.04480.x) TAReuk454FWD1 CCAGCASCYGCGGTAATTCC TAReukREV3_modified ACTTTCGTTCTTGATYRATGA

Domain Eukaryota (Eukaryotes)

Bacteria and Archaea in marine environments, profiled by sequencing the v4 region of the 16S ssu rRNA gene, using the primer set published by Apprill et al. (doi:10.3354/ame01753) 515F GTGCCAGCMGCCGCGGTAA 806RB GGACTACNVGGGTWTCTAAT

Domain Bacteria (Bacteria), Archaea (Archaea)

Temporal Coverage

Start Date / End Date 2007-11-20 / 2016-07-29