説明
Cyanobacterial 16S rRNA gene sequences from cyanobacterial mats of Antarctic (Byers Peninsula) origin obtained by clone library
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権利
研究者は権利に関する下記ステートメントを尊重する必要があります。:
パブリッシャーとライセンス保持者権利者は SCAR - Microbial Antarctic Resource System。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
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キーワード
Metadata
連絡先
- メタデータ提供者
- 連絡先
- Researcher
地理的範囲
Byers Peninsula, Livingston Island, Antarctica
| 座標（緯度経度） | 南 西 [-62.7, -61.5], 北 東 [-62.5, -61] |
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生物分類学的範囲
All data provided are OTUs of the 16S rRNA gene which were identified via a comparison to online databases to family or genus level. For most OTUs identification to species level was not possible
| Phylum | Cyanobacteria (Cyanobacteria) |
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時間的範囲
| 開始日 / 終了日 | 2009-02-01 / 2009-02-28 |
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プロジェクトデータ
説明がありません
| タイトル | DI698/18-1 Dietrich |
|---|---|
| ファンデイング | Deutsche Forschungsgesellschaft DFG |
プロジェクトに携わる要員:
- 研究代表者
収集方法
Cyanobacterial samples were collected from five different sampling sites in the Antarctic Specially Protected Area (ASPA) No. 126 of Byers Peninsula, Livingston Island (62° 34' 35" to 62° 4' 35" S and 60° 54' 14" to 61° 13' 07" W), South Shetland Islands, Antarctic Peninsula, during an expedition in February 2009. Microbial mats were probed using a sterile spatula, sealed in sterile plastic bags or tubes and stored frozen (-20 °C) for DNA extraction.
| Study Extent | Samples were collected on Byers Peninsula (ASPA 126) in February 2009. This area is a summer snow- and ice-free area. Various microbial mats on wet soil, meltwater and seepages were sampled. |
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| Quality Control | Data were published in a peer-reviewed journal DOI: 10.1038/NCLIMATE1418 |
Method step description:
- After collection the samples were stored at -20°C until further processing. DNA was extracted from the samples in three replicates and combined. 16S rRNA genes were amplified using cyanobacteria specific primers (Saker et al. 2005). PCR Products were cloned using the TOPO TA Cloning Kit following the standard protocol. Two to three clones of each individual restriction fragment length polymorphism pattern were sequenced at GATC Biotech. All sequences were deposited with the GenBank database. Saker, M. L., Jungblut, A. D., Neilan, B. A., Rawn, D. F. K. & Vasconcelos, V. M. Detection of microcystin synthetase genes in health food supplements containing the freshwater cyanobacterium Aphanizomenon flos-aquae. Toxicon 46, 555?562 (2005).